PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459429.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 319aa    MW: 36194.8 Da    PI: 8.5281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459429.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-05155174120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C k+F+r  nL+ H+
  XP_016459429.1 155 FSCHLCYKTFNRYNNLQMHM 174
                     89*****************9 PP

2zf-C2H215.84e-05239261123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  k + ++H +++
  XP_016459429.1 239 FMCRKCGKPFAVKGDWRTHEKNC 261
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.39E-5148177No hitNo description
PROSITE profilePS5015710.18155182IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SuperFamilySSF576673.12E-6223259No hitNo description
Gene3DG3DSA:3.30.160.604.6E-5235259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTEPYYNFFT GWFNFLPLHQ QYLSSPNFCY NNSNNNMNFQ EEVSLAPPPS PPLKEALPLL  60
KNVDKLDKTN TTKYSYESTT SSIAEEDNNN NENVSVSLHI GLPISPSSDL TSSRVSFSSE  120
SVGGNKEFDV PLSKLNKGQY WIPTPSQILI GPTQFSCHLC YKTFNRYNNL QMHMWGHGSQ  180
YRKGPESLRG TQPSAMLRLP CYCCAPGCKH NIDHPRARPL KDFRTLQTHY KRKHGVKPFM  240
CRKCGKPFAV KGDWRTHEKN CGKIWYCICG SDFKHKRSLK DHIKSFGRGH GAVGIPNLEE  300
LEDESTSEIE QDVGSSSPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-152HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599843.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
RefseqXP_016459429.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-124ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLK4AY981e-160K4AY98_SOLLC; Uncharacterized protein
STRINGSolyc01g087050.2.11e-159(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-112C2H2 family protein